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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82592736_82593931_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82592736 - 82593931
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTTTCTCCACT
Flanking Amino Acid:
ESAAEFQAEFVPLTRLAEES
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
79.3
0.66
0.8
78
29.6
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
58.1
0.34
2
80.64
41.1

Associated Gene:

Gene:
GRHPR
Ensembl Gene ID:
ENSAPLG00000010737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011171
82590127 - 82596055
5929