About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82594037_82594699_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82594037 - 82594699
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTCTCTCATT
Flanking Amino Acid:
TVGIIGLGRIGQAVARRLKP
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.2
0.66
0.8
77.2
30.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
51.2
0.12
2.1
75.83
41.7

Associated Gene:

Gene:
GRHPR
Ensembl Gene ID:
ENSAPLG00000010737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011171
82590127 - 82596055
5929