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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82595657_82595746_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82595657 - 82595746
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGGTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CGGCTCTGACCC
Flanking Amino Acid:
RIDREVLDAAGPSLKVISTM
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.7
42.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.9
0.43
1
62.2
39.8
Minor 5ss
25.7
-2.8
3.1
23.3
37.3
Minor BPS
44.7
-0.4
1.7
48.78
41.1

Associated Gene:

Gene:
GRHPR
Ensembl Gene ID:
ENSAPLG00000010737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011171
82590127 - 82596055
5929