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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82595878_82595966_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82595878 - 82595966
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
GTGTCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGCGGCTGACGG
Flanking Amino Acid:
EGLRVLAEAGGCRVQQWDSE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.4
41.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
69.5
0.44
0.9
62.5
34.6
Minor 5ss
23.7
-3
3.2
21.5
37.3
Minor BPS
32.7
-1.4
2.1
28.89
41.5

Associated Gene:

Gene:
GRHPR
Ensembl Gene ID:
ENSAPLG00000010737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011171
82590127 - 82596055
5929