About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82627527_82644525_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82627527 - 82644525
Intron Length:
16999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCCATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACCAATT
Flanking Amino Acid:
PEIWRQYHLTTKPGPIKAAS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.4
0.73
0.8
76
32.3
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
48.6
-0
2.1
74.34
42.4

Associated Gene:

Gene:
ZCCHC7
Ensembl Gene ID:
ENSAPLG00000010747
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011203
82621786 - 82735378
113593