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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82789978_82790906_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82789978 - 82790906
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTCTCACTGACT
Flanking Amino Acid:
QQVPASSHSIASTGSVTQVS
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.4
0.75
0.8
77.1
31.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.9
0.11
2
73.23
43.6

Associated Gene:

Gene:
PAX5
Ensembl Gene ID:
ENSAPLG00000010841
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021034
82770779 - 82900005
129227
ENSAPLT00000011283
82770779 - 82900005
129227
ENSAPLT00000035436
82770779 - 82892244
121466