About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82868519_82892020_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82868519 - 82892020
Intron Length:
23502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
SAPALTGMVPGSEFSGSPYS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.7
0.69
0.8
81
30
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
PAX5
Ensembl Gene ID:
ENSAPLG00000010841
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035436
82770779 - 82892244
121466
ENSAPLT00000021034
82770779 - 82900005
129227
ENSAPLT00000011283
82770779 - 82900005
129227