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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82997157_82997237_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
82997157 - 82997237
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCACTGTTA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGATTTTATTT
Flanking Amino Acid:
NVNTTRVISVNYTLKCQTQS
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
55.2
42.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.7
0.76
0.9
79.9
37.7
Minor 5ss
30.7
-2.2
4.4
45.8
44.1
Minor BPS
50.5
0.09
1.6
65.97
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018109
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043759
82996979 - 83002246
5268