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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82997405_82997464_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82997405 - 82997464
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCTCTAGG
5'SS Class:
weak_major
3'SS Sequence:
CTCCATGAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAA
U12 Branch Point Sequence:
TGCTCCATGAAT
Flanking Amino Acid:
SAVVSAERKLGLWQQFPWLG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.4
48.9
47
Major BPS
50.5
0.01
1.1
43.3
37.8
Major PPT
60.3
0.23
1
58.6
40.7
Minor 5ss
42.3
-0.8
2.4
48.8
42.1
Minor BPS
56
0.27
1.8
74.44
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018109
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043759
82996979 - 83002246
5268