Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82998219_82998263_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

82998219 - 82998263

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CACGTCTAAATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TCTGCATTTACA

Flanking Amino Acid:

SKKQVEYVKKGQYPSP*

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.4

39.5

Major BPS

72.8

0.57

30.3

Major PPT

55.9

0.13

51.1

36.9

Minor 5ss

31.6

-2.1

3.1

31.8

42.6

Minor BPS

52.5

0.07

68.43

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015923

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016624

82998200 - 83000539

2340