Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82999903_83000351_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82999903 - 83000351

Intron Length:

449

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTAGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TTTTCTTTAGCA

Flanking Amino Acid:

LTAAEVLPERRCHSVELDLN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

36.9

Major BPS

73.9

0.59

30.2

Major PPT

87.7

0.85

0.8

85.6

27.3

Minor 5ss

40.3

-1.1

3.5

58.3

46.6

Minor BPS

78.1

0.88

1.4

87.27

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015923

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016624

82998200 - 83000539

2340