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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8352174_8354324_R

Intron Information:

Intron Rank:
135918
Intron Class:
major
Intron Phase:
Intron Coordinates:
8352174 - 8354324
Intron Length:
2151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAGTAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
61.2
35.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.1
0.86
0.7
84.2
30.9
Minor 5ss
28.6
-2.5
3.5
36.6
47.9
Minor BPS
55.5
0.17
1.7
69.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020545
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025337
8351799 - 8356432
4634