Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8354432_8355324_R

Intron Information:

Intron Rank:

135919

Intron Class:

major

Intron Phase:

Intron Coordinates:

8354432 - 8355324

Intron Length:

893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTGTCCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

ACTAATTCAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

79.6

33.9

Major BPS

77.9

0.69

0.8

75.9

Major PPT

64.8

0.33

1.1

63.4

42.1

Minor 5ss

33.5

-1.9

3.1

43.7

Minor BPS

48.3

-0

1.7

64.22

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025337

8351799 - 8356432

4634