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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_848172_855031_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
848172 - 855031
Intron Length:
6860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGGGCTTTAACA
Flanking Amino Acid:
TSLTFDEFAIVKPDPPESVV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
68.8
0.59
1.4
71.61
40.9

Associated Gene:

Gene:
CNTFR
Ensembl Gene ID:
ENSAPLG00000005167
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023341
836837 - 1012523
175687
ENSAPLT00000035309
836837 - 952117
115281
ENSAPLT00000017667
836837 - 947054
110218
ENSAPLT00000031071
836837 - 995707
158871
ENSAPLT00000005348
836837 - 947631
110795
ENSAPLT00000029149
836837 - 951951
115115
ENSAPLT00000005346
836837 - 1001683
164847
ENSAPLT00000026697
836837 - 994157
157321
ENSAPLT00000043787
836837 - 939268
102432