Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_856103_884503_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

856103 - 884503

Intron Length:

28401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATAAT

U12 Branch Point Sequence:

TGATGAATAATT

Flanking Amino Acid:

LKYQTYLRVGTPPKEPVLMC

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.7

30.1

Major BPS

62.3

0.31

1.3

64.3

39.7

Major PPT

86.3

0.82

0.7

24.1

Minor 5ss

33.3

-1.9

2.7

38.5

32.5

Minor BPS

-0.2

2.2

68.08

42.3

Associated Gene:

Gene:

CNTFR

Ensembl Gene ID:

ENSAPLG00000005167

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031071

836837 - 995707

158871

ENSAPLT00000017667

836837 - 947054

110218

ENSAPLT00000029149

836837 - 951951

115115

ENSAPLT00000005348

836837 - 947631

110795

ENSAPLT00000026697

836837 - 994157

157321

ENSAPLT00000043787

836837 - 939268

102432

ENSAPLT00000005346

836837 - 1001683

164847

ENSAPLT00000023341

836837 - 1012523

175687

ENSAPLT00000035309

836837 - 952117

115281