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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_86060_86909_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86060 - 86909
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GCACTGACAACT
Flanking Amino Acid:
TCLLIVVSVQIGLDTSYWTV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
38.1
-0.8
2.2
52.08
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019345
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026533
77044 - 88029
10986