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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8628840_8630335_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8628840 - 8630335
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
TTTATTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
DREIIKRNVRKSSGRGELLI
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
68.6
39.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86
0.81
0.7
85
29.6
Minor 5ss
44.7
-0.6
3
56.5
47.7
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
SYT4
Ensembl Gene ID:
ENSAPLG00000011860
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012336
8624907 - 8633183
8277