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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8695271_8757398_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8695271 - 8757398
Intron Length:
62128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
MLGAGGVGKSAMTMQFISHR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
82.6
31.3
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
77.5
0.62
0.8
69.3
36.9
Minor 5ss
45.2
-0.5
2.8
62.5
42.2
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
RIT2
Ensembl Gene ID:
ENSAPLG00000027064
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021239
8694774 - 8900022
205249