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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8757456_8780496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8757456 - 8780496
Intron Length:
23041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCTAT
U12 Branch Point Sequence:
CTATGCTTAGTT
Flanking Amino Acid:
RFPDYHDPTIEDAYKTQVRI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
56.4
0.16
1.3
56.1
41.3
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
53.3
0.18
2
72.42
44.9

Associated Gene:

Gene:
RIT2
Ensembl Gene ID:
ENSAPLG00000027064
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021239
8694774 - 8900022
205249