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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8780571_8803319_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8780571 - 8803319
Intron Length:
22749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTT
Flanking Amino Acid:
YLDILDTAGQAEFTAMRDQY
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.4
0.77
0.8
79.4
32.3
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
68.9
0.67
1.5
82.89
39.2

Associated Gene:

Gene:
RIT2
Ensembl Gene ID:
ENSAPLG00000027064
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021239
8694774 - 8900022
205249