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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8803512_8898718_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8803512 - 8898718
Intron Length:
95207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAGACC
Flanking Amino Acid:
NKIDLEEFRQVSTEEGMSLA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
49.8
-0
2
67.24
38.4

Associated Gene:

Gene:
RIT2
Ensembl Gene ID:
ENSAPLG00000027064
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021239
8694774 - 8900022
205249