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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_884735_908433_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
884735 - 908433
Intron Length:
23699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CCCCCCTCCACA
Flanking Amino Acid:
VVYAQRHSQQDSHIQYERVG
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
70.3
0.46
0.7
63.4
24.7
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
46
-0.3
2
52.44
45.6

Associated Gene:

Gene:
CNTFR
Ensembl Gene ID:
ENSAPLG00000005167
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017667
836837 - 947054
110218
ENSAPLT00000031071
836837 - 995707
158871
ENSAPLT00000005348
836837 - 947631
110795
ENSAPLT00000029149
836837 - 951951
115115
ENSAPLT00000005346
836837 - 1001683
164847
ENSAPLT00000026697
836837 - 994157
157321
ENSAPLT00000023341
836837 - 1012523
175687
ENSAPLT00000043787
836837 - 939268
102432