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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_908516_967678_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
908516 - 967678
Intron Length:
59163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAAACCCTGACT
Flanking Amino Acid:
TSPGVWTGGEMANPVPSACC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
77.9
0.63
0.8
72.1
32.6
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
51.3
0.12
1.8
66.78
43.4

Associated Gene:

Gene:
CNTFR
Ensembl Gene ID:
ENSAPLG00000005167
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023341
836837 - 1012523
175687
ENSAPLT00000005346
836837 - 1001683
164847
ENSAPLT00000031071
836837 - 995707
158871
ENSAPLT00000026697
836837 - 994157
157321