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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9132683_9133569_F

Intron Information:

Intron Rank:
127508
Intron Class:
major
Intron Phase:
Intron Coordinates:
9132683 - 9133569
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGAAAA
5'SS Class:
major
3'SS Sequence:
ATACTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATACTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
69.6
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.7
0.42
1
63.1
41.3
Minor 5ss
34.3
-1.8
2.7
40.2
45.5
Minor BPS
60.5
0.32
1.6
69.52
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018771
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029305
9132266 - 9135196
2931