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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9147935_9164330_R

Intron Information:

Intron Rank:
139553
Intron Class:
major
Intron Phase:
Intron Coordinates:
9147935 - 9164330
Intron Length:
16396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022555
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027208
9139534 - 9188235
48702