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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9164389_9187643_R

Intron Information:

Intron Rank:
139554
Intron Class:
major
Intron Phase:
Intron Coordinates:
9164389 - 9187643
Intron Length:
23255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GGTCCTGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTCCCTCACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.1
0.41
1
60.9
40.3
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
48.8
-0
1.8
60.6
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022555
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027208
9139534 - 9188235
48702