About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9312222_9313382_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9312222 - 9313382
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAAAT
Flanking Amino Acid:
KEPADNENLDQDLCTFLISR
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.9
0.56
0.9
70.7
39.9
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
77.9
0.95
1.3
88.72
36.1

Associated Gene:

Gene:
PIK3C3
Ensembl Gene ID:
ENSAPLG00000012759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013313
9267439 - 9333582
66144
ENSAPLT00000013314
9267439 - 9333582
66144