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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9317580_9318167_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9317580 - 9318167
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATAAAT
Flanking Amino Acid:
TGIGSFGNLNENLVESKHHK
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
0.9
65.9
35
Minor 5ss
34.5
-1.8
3.3
44.8
43.4
Minor BPS
54.5
0.22
1.7
73.23
37.1

Associated Gene:

Gene:
PIK3C3
Ensembl Gene ID:
ENSAPLG00000012759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013314
9267439 - 9333582
66144