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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9317580_9318705_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9317580 - 9318705
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATAAAT
Flanking Amino Acid:
VKIPDPQMSMENLVESKHHK
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.5
0.42
0.9
65.9
35
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
54.5
0.22
1.7
73.23
37.1

Associated Gene:

Gene:
PIK3C3
Ensembl Gene ID:
ENSAPLG00000012759
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013313
9267439 - 9333582
66144