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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_93650_94757_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93650 - 94757
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TTATCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
CTTGGTTTATCT
Flanking Amino Acid:
KIWVLTGDKQETAMNIGYSC
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
85.5
0.8
0.7
84.6
30
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
48.7
-0
2.1
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002472
93540 - 123944
30405