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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9381336_9382928_R

Intron Information:

Intron Rank:
150695
Intron Class:
major
Intron Phase:
Intron Coordinates:
9381336 - 9382928
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGCA
5'SS Class:
major
3'SS Sequence:
TTTCATTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62.1
36.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.3
0.66
1
76
37.6
Minor 5ss
28.7
-2.4
3.6
39
46.3
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028579
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021725
9381247 - 9383989
2743