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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9425506_9426297_F

Intron Information:

Intron Rank:
129744
Intron Class:
major
Intron Phase:
Intron Coordinates:
9425506 - 9426297
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
GTTTTATTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.4
0.35
1.2
67.7
41.9
Minor 5ss
38.3
-1.3
3.4
50
46.3
Minor BPS
62.3
0.25
1.5
63.94
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019824
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029735
9424966 - 9426709
1744