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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9449231_9451759_R

Intron Information:

Intron Rank:
130343
Intron Class:
major
Intron Phase:
Intron Coordinates:
9449231 - 9451759
Intron Length:
2529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
ATGAAGATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
69.7
43.7
Major BPS
67.7
0.44
1
58
38.9
Major PPT
89.4
0.89
0.6
87.7
22.3
Minor 5ss
54
0.14
2.6
74.1
42.2
Minor BPS
41.8
-0.5
2.3
61.12
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017364
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028751
9448925 - 9455683
6759