Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9478089_9478164_R

Intron Information:

Intron Rank:

136721

Intron Class:

major

Intron Phase:

Intron Coordinates:

9478089 - 9478164

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATTAC

U12 Branch Point Sequence:

CTCTCTCTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

71.6

40.1

Major BPS

49.7

-0

1.2

43.7

38.9

Major PPT

80.8

0.69

0.7

75.3

26.8

Minor 5ss

31.3

-2.1

3.1

38.3

46.6

Minor BPS

48.5

-0.1

2.1

63.12

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026478

9477968 - 9478485

518