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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9499142_9500826_F

Intron Information:

Intron Rank:
125267
Intron Class:
major
Intron Phase:
Intron Coordinates:
9499142 - 9500826
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.9
76.3
32.2
Minor 5ss
38.6
-1.3
3.4
52.3
46.7
Minor BPS
50.9
0.11
1.5
66.06
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047233
9492682 - 9504846
12165