About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_967790_993983_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
967790 - 993983
Intron Length:
26194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGCAGG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
ATGACCTGACAG
Flanking Amino Acid:
HPVPDSGQQWKLTDLSGEGR
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.2
48.1
Major BPS
60.1
0.25
1
51
35.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
44.4
-0.6
2.6
48.6
47.4
Minor BPS
44.7
-0.5
1.9
48.99
44

Associated Gene:

Gene:
CNTFR
Ensembl Gene ID:
ENSAPLG00000005167
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026697
836837 - 994157
157321