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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_967790_995326_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
967790 - 995326
Intron Length:
27537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGTTT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
ATGACCTGACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
79.5
36.8
Major BPS
60.1
0.25
1
51
35.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
38.1
-1.3
3.4
56
48.2
Minor BPS
44.7
-0.5
1.9
48.99
44

Associated Gene:

Gene:
CNTFR
Ensembl Gene ID:
ENSAPLG00000005167
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031071
836837 - 995707
158871