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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9848264_9854754_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9848264 - 9854754
Intron Length:
6491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
VSASLSGESRSSSEKAFHRE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
C9
Ensembl Gene ID:
ENSAPLG00000008988
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034857
9848178 - 9868458
20281
ENSAPLT00000009361
9848178 - 9868458
20281