Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9860564_9861610_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9860564 - 9861610

Intron Length:

1047

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTGTATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

GTTCTCTCATCT

Flanking Amino Acid:

GSMLTRFTERNQTFLHVKGK

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.9

84.1

30.2

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

74.9

0.56

0.9

72.6

36.7

Minor 5ss

43.3

-0.7

2.8

49.9

46.4

Minor BPS

52.9

0.17

1.8

74.46

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034857

9848178 - 9868458

20281

ENSAPLT00000009361

9848178 - 9868458

20281