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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9924047_9925242_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9924047 - 9925242
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTCATCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTGCTTAATT
Flanking Amino Acid:
GKWLGRIKGCYGYIKTTVVE
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.6
0.51
0.9
70.8
35
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
73.1
0.8
1.8
87.41
38.9

Associated Gene:

Gene:
FYB1
Ensembl Gene ID:
ENSAPLG00000008903
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009251
9897930 - 9937585
39656