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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9925376_9928408_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9925376 - 9928408
Intron Length:
3033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
DDVGEQDSISSQSGGRNGAG
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
54
0.1
1
59.7
32.6
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
FYB1
Ensembl Gene ID:
ENSAPLG00000008903
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009251
9897930 - 9937585
39656