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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9929676_9930255_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9929676 - 9930255
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCATACTCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACCTTTTACA
Flanking Amino Acid:
DGVDDTDTVTRSVSQDEDKN
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
53.8
0.09
1.1
52
36.7
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
63.8
0.43
1.6
73.71
37.4

Associated Gene:

Gene:
FYB1
Ensembl Gene ID:
ENSAPLG00000008903
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009251
9897930 - 9937585
39656