About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9933802_9934120_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9933802 - 9934120
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATCTGGCATC
Flanking Amino Acid:
EEKEFRKKFKFEGEIKVLYS
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
40.4
-0.7
2.3
52.8
39

Associated Gene:

Gene:
FYB1
Ensembl Gene ID:
ENSAPLG00000008903
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009251
9897930 - 9937585
39656