About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9949027_9949204_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9949027 - 9949204
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCATCCTGACGC
Flanking Amino Acid:
ARSLRHLRIRGRNDSGEENV
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
67.4
0.39
0.8
60.5
29.4
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
45
-0.4
2
51.45
45.5

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004108
9948343 - 10021868
73526
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631