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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9949253_9964681_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9949253 - 9964681
Intron Length:
15429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTCTACTAATA
Flanking Amino Acid:
EENVPLDLSREPCDNMREIL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
63.4
42.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
30
-2.3
3.4
39.7
45.8
Minor BPS
48
-0.1
1.9
63.51
36.2

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631
ENSAPLT00000004108
9948343 - 10021868
73526