Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_99752_101059_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

99752 - 101059

Intron Length:

1308

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAT|GCACAGTTC

5'SS Class:

weak_major

3'SS Sequence:

CATGTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

AGCTCTAGAAAT

Flanking Amino Acid:

SYASHDILLHNTEKVDFSYN

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.3

0.2

1.4

60.8

40.7

Major BPS

61.3

0.28

30.6

Major PPT

82.4

0.73

0.9

76.6

37.2

Minor 5ss

31.7

-2.1

4.6

52.9

Minor BPS

46.5

-0.1

1.8

62.56

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002472

93540 - 123944

30405