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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9981065_9984356_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9981065 - 9984356
Intron Length:
3292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTATAAAGAAAC
Flanking Amino Acid:
RTQALRLVRKMITVNASLFP
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.4
0.8
0.9
83.9
31
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
41.7
-0.6
2.1
57.71
39.4

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009005
9949711 - 10021868
72158
ENSAPLT00000004108
9948343 - 10021868
73526
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631