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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9984484_9985087_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9984484 - 9985087
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
RACIAIICELALQNPEVVAL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.6
0.67
0.9
78.6
35
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631
ENSAPLT00000009005
9949711 - 10021868
72158
ENSAPLT00000004108
9948343 - 10021868
73526