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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_9988688_9989622_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9988688 - 9989622
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
GTTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
AATCTATACATT
Flanking Amino Acid:
VLCIPNMEIRRGLLEVLYDI
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
82.7
0.74
1
80.6
37
Minor 5ss
40.1
-1.1
3.2
49.2
47.1
Minor BPS
40.3
-0.6
2.1
57.59
39.3

Associated Gene:

Gene:
RICTOR
Ensembl Gene ID:
ENSAPLG00000008632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033935
9948343 - 10021868
73526
ENSAPLT00000021909
9948343 - 10021973
73631
ENSAPLT00000009005
9949711 - 10021868
72158
ENSAPLT00000004108
9948343 - 10021868
73526